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  • FluxSimulator: FASTQ/FASTA output?

    I am working with the interesting tool FluxSimulator. Everything looks fine except that I could not get FASTQ/FASTA files. The input error model file I used was the "error_model_qualities.err" downloaded from the Flux project website.

    Is there any trick to make the FASTQ/FASTA reads?
    Thank you very much!

  • #2
    The error message I got was:
    java.lang.ArrayIndexOutOfBoundsException
    at java.lang.System.arraycopy(Native Method)
    at genome.sequencing.rnaseq.simulation.A.A(Unknown Source)
    at genome.sequencing.rnaseq.simulation.A.A(Unknown Source)
    at genome.sequencing.rnaseq.simulation.A$_A.A(Unknown Source)
    at genome.sequencing.rnaseq.simulation.A$_A.run(Unknown Source)
    at genome.sequencing.rnaseq.simulation.A.x(Unknown Source)
    at genome.sequencing.rnaseq.simulation.A.run(Unknown Source)
    at genome.sequencing.rnaseq.simulation.A.A.run(Unknown Source)
    at java.lang.Thread.run(Thread.java:680)
    at genome.sequencing.rnaseq.simulation.A.E$_A.run(Unknown Source)

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    • #3
      can anybody answer this question please? Thanks!

      Comment


      • #4
        Hi all,
        I guess there is some problem with the build1223. I just found that earlier version works fine (at least on Linux platform)

        Comment

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