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The standard version you get on http://genome.ucsc.edu/FAQ/FAQblat.html#blat3 is for 32 bit systems (theres also one for linux) - at least as far as I'm informed. -
What architecture? The pre-mades are not for "off brand" cpus. You may have to download the source and compile which is easy if you've done this stuff before. Trick is to point to the right libraries. It might not be so easy if you are not a command line warrior. If not, ask for some help from your local Ubuntu or Red Hat users.Last edited by Richard Finney; 03-29-2011, 08:15 AM.Comment
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there is no version for 32 bit... at least for linux
my architecture is ubuntu 32bit
thanks
more ideas?Comment
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The binary packages here are 32 bit, linux executables. Download blatSuite.34.zip, unzip where you want to install it and blat away.Comment
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OK, thanks.
i did it...
now i am having this error...
Can't open /home/Desktop/transABySS/trans-ABySS/annotations/mm9/genome.fa to read: Value too large for defined data type
i am having blat against mm9 from ucsc 2.6 Gb
any ideas?Comment
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Data variability is still an issue in sequencing technologies despite the advances in reproducibility and accuracy of these platforms. But the problem does not originate in the sequencing itself, but in the previous steps, before the sample reaches the sequencer.
The first step is collection, followed by preservation and sample preparation for analysis. Most scientists overlook those steps, but not being careful might just be skewing the experiment’s results.
...06-02-2026, 10:05 AM -
With the launch of new single-cell sequencing platforms in 2026, the field stands at an exciting inflection point. This article surveys the most impactful advances in the field and discusses how they’re reshaping research in cancer, immunology, and beyond.
Introduction
Single-cell sequencing technologies have undergone remarkable advances over the past decade, transitioning from low-throughput experimental approaches to highly scalable platforms capable of...05-22-2026, 06:42 AM
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