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The standard version you get on http://genome.ucsc.edu/FAQ/FAQblat.html#blat3 is for 32 bit systems (theres also one for linux) - at least as far as I'm informed. -
What architecture? The pre-mades are not for "off brand" cpus. You may have to download the source and compile which is easy if you've done this stuff before. Trick is to point to the right libraries. It might not be so easy if you are not a command line warrior. If not, ask for some help from your local Ubuntu or Red Hat users.Last edited by Richard Finney; 03-29-2011, 08:15 AM.Comment
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there is no version for 32 bit... at least for linux
my architecture is ubuntu 32bit
thanks
more ideas?Comment
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The binary packages here are 32 bit, linux executables. Download blatSuite.34.zip, unzip where you want to install it and blat away.Comment
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OK, thanks.
i did it...
now i am having this error...
Can't open /home/Desktop/transABySS/trans-ABySS/annotations/mm9/genome.fa to read: Value too large for defined data type
i am having blat against mm9 from ucsc 2.6 Gb
any ideas?Comment
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