Hi,
Where can I find the promoter sequence of all the gene of an organism (in this case Bos Taurus) ?
Thanks,
N.
Where can I find the promoter sequence of all the gene of an organism (in this case Bos Taurus) ?
Thanks,
N.
-
-
Hi Nico
Try http://rsat.ulb.ac.be/rsat/, alot of differenet tools there.
I think there is a tool called something like "retrieve ensembl seq." where you can define the regions you wish to retrieve. Also Bos Taurus
All the best
Morten -
Galaxy should be another option. You can get data from various servers.
Comment
-
Just to add to the list - I'd normally use BioMart to extract this kind of data.
http://www.ensembl.org/biomart/martview/Comment
-
Ok for biomart,
But I do not see where is the option for the promoter attribute ?Comment
-
If you skip the filtering step all together (so you get information on all genes), and then select "Attributes". From there you can select "Sequences" from the radio button at the top, you can then select "Flank (Transcript)", and then you can specify how far back from the TSS you want your promoter sequence to extend.Originally posted by NicoBxl View PostComment
-
Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?
Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating...10-14-2026, 09:55 AM -
Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.
We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing...
Comment