I have a dataset of Nanopore sequencing results from a phage-display library. I'm not finding any good hits for a pre-existing workflow or best practices for analyzing this data. Does anyone have suggestions?
Ideally, this would involve an efficient fastq-quality score-aware multi-aligner across the ~100k ~400nt-long sequences along with some clustering/phylogeny to group the most similar sequences into families.
Ideally, this would involve an efficient fastq-quality score-aware multi-aligner across the ~100k ~400nt-long sequences along with some clustering/phylogeny to group the most similar sequences into families.
