SeqMap is able to generate Eland output but there are some columns missing in Eland output. Anybody having this problem too?
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Napoleon Bonaparte: "Money, money, money!", bioinformatician: "Format, format, format, ..." -
Which version of the GAPipeline are you using? -
We're not using GAPipeline. We receive Solexa reads in numeric format and do the alignment ourselves with SeqMap.
I don't know what type of Solexa machine is used in our sequencing facility or their software specifications.Napoleon Bonaparte: "Money, money, money!", bioinformatician: "Format, format, format, ..."Comment
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NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification,...10-30-2026, 06:46 AM -
Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?
Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating...10-14-2026, 09:55 AM
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