17 results in 0.0022 seconds.
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eland extended
I've been given some 'eland extended' files to work with. There really isn't much online about these. I'm trying to convert them to sam/bam format or... -
Using "Eland" format in Bowtie
Hello, I am new to Bowtie, so please pardon my naivety.
I have a reads file in the following format, which I suppose is the Eland format...Last edited by medalofhonour; 07-19-2011, 09:26 AM. -
eland codes for unmapped reads?
Hi,
I'm analyzing some Illumina data (HiSeq) using Bioconductor and am curious to look a little bit more at the unmapped reads.
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What's left of 5 million reads
Hi,
I'm working with Illumina GAII data (5 million reads) from a 5' cap capture library. I did the mapping against a transcriptome with ELAND_standalone... -
ELAND output quality score
The *_sorted.txt (among other) files give a quality score for each read. How exactly is that quality score computed? I understand that it is comes as... -
ELAND limitation with version 4 kits
Hi!
I have been using GAPipeline and ELAND for about a year with no major problems - mainly for the QC of the runs.
Recently, we... -
Position less than 0 from eland sorted
I was trying to use findpeaks on eland results using the 'separateelandsortedreads.jar' and it pointed out -ve coordinate mapped reads
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wig file compression
Hi,
I have written a script to produce wig files from Eland aligned output, however the files are mostly too large to load onto UCSC for... -
Eland error: Could not identify index
I am running Eland to map short sequence reads to genome, but the script fails on the first line of the fastq file with the following message:
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Eland2 alignment format
Hi everyone,
I have received data in "eland2" format, generated with eland's "--multi" option. Unfortunately, I couldn't... -
ELAND RNA for gene expression (error-rate)
Hi all,
For one of our 50bp rnaSEQ run, the error profile looks very strange, with a peak of 10% error rate around base 22 for all of lane1... -
ELAND and circular genomes?
Hi all,
OK, so I'm pretty sure this is a silly question, but I haven't been able to find a definitive answer!
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Coverage display?
Hi all,
I'm trying to display genomic coverage for an Illumina run (aligned to genome w ELAND, eland_multi output files). My organism, Haloferax... -
Eland output from SeqMap
SeqMap is able to generate Eland output but there are some columns missing in Eland output. Anybody having this problem too? -
Solexa anomaly.txt for structual variants
Hi there,
Anyone has experience parsing information out of anomaly.txt generated from eland_pair analysis? It has information about mate...
