chord->getLength Newbler error

veena

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Join Date: Feb 2009

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#1

chord->getLength Newbler error

02-11-2009, 12:49 PM

Hi,

I'm trying to run a Newbler assembly on a sample that is predicted to be ~8-9Mb but get the following error message:

Error: An internal error has occurred in the computation.
Assertion: chord->getLength() > 10
Location: 'bool ChordMatrix::checkAddChordColumn(Chord*, int)'
[ChordMatrix.cpp:182]
Please report this error to your customer support representative.

I was wondering if this rings a bell to anybody and if you knew how to fix it.

Thanks!
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Torst

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Join Date: Apr 2008

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#2

02-18-2009, 03:15 PM

I experienced this error a lot when using FASTA file input rather than SFF files. This was with Version 1 of Newbler. If you can get Version 2 of Newbler, try that.
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plattsa

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Join Date: Mar 2009

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#3

07-23-2010, 09:32 AM

I still get this error with FASTA files in 2.3, no real help from Roche when I contacted them.
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