different softwares for whole-genome alignment?

[bio_tt]

Hi everyone !
i have to compare two genomes, i have test mugsy,last,lastz and something else,so i got different results, for mugsy,the aligned reads are long ,but for the last,and lastz ,the aligned reads are short,how can i integrate these results?

Thanks in advance !
Cheers

[bbrij87]

You can club the results in graphic format using photoshop or some other image editor.

[bio_tt]

You can club the results in graphic format using photoshop or some other image editor.

hi,thank you for your reply.
i didn't catch what you mean.i want to integrate these results to get a more accurate result.

[bbrij87]

Can you let me know how you want to integrated the results? I thought you want to combine/compare them.

[bio_tt]

Can you let me know how you want to integrated the results? I thought you want to combine/compare them.

combine,i think.the simplest way is to extract the common regions,but i will lose some large regions.so can you give me some tips to get more credible results?
thank you very much