VCF formated bovine SNPs
Does anybody know if and how I can access a list of all reported bovine SNPs in VCF format?
-
-
Yes, vcf files can always be viewed from an editor. Check
http://samtools.sourceforge.net/mpileup.shtml
for what the columns mean.
HTH -
It is not vcf format, but maybe it helps, though:
The dbSNP Build 133 for cow (txid 9913) was recently announced on the dbSNP site
check the readme file here for all downloadable files.
cheers,
SophiaComment
-
Cheers for the reply guys! It's looking like we're going to convert the files to .bed format instead
Comment
-
Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?
Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating...10-14-2026, 09:55 AM -
Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.
We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing...
Comment