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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,262 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
bwa mem segfault; bwa bwasw breaks MarkDuplicates by ElenaN
Started by ElenaN, 06-13-2013, 03:17 AM
2 responses
22,615 views
0 reactions
 Last Post sdriscoll
by sdriscoll
06-30-2013, 10:23 PM  
GTF/GFF3 format and new Cufflinks by ega2d
Started by ega2d, 07-28-2011, 06:40 AM
3 responses
8,981 views
0 reactions
 Last Post windowon
by windowon
06-30-2013, 06:54 PM  
How can I determine the mapping rates of tophat output such as accepted_hits.bam? by lucyyang1991
Started by lucyyang1991, 06-28-2013, 03:44 AM
5 responses
6,080 views
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 Last Post GenoMax
by GenoMax
06-30-2013, 04:32 PM  
Target prediction between complementary RNA-seq and Small-RNA-seq data sets by Amielynn
Started by Amielynn, 06-30-2013, 03:29 PM
0 responses
2,164 views
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 Last Post Amielynn
by Amielynn
06-30-2013, 03:29 PM  
tmap mapall usage by guil
Started by guil, 06-12-2013, 05:51 AM
1 response
3,857 views
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 Last Post nilshomer
by nilshomer
06-29-2013, 08:07 PM  
Use SAM file to pull reads from FASTQ by pbm13
Started by pbm13, 06-28-2013, 03:17 PM
5 responses
3,027 views
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 Last Post sdriscoll
by sdriscoll
06-29-2013, 07:46 PM  
Picard: problem with Java? by aleidenroth
Started by aleidenroth, 01-17-2011, 05:15 AM
9 responses
14,751 views
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 Last Post nilshomer
by nilshomer
06-29-2013, 07:37 PM  
Multi-threaded (faster) SAMtools by nilshomer
Started by nilshomer, 03-04-2012, 07:47 AM
63 responses
41,900 views
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 Last Post nilshomer
by nilshomer
06-29-2013, 07:32 PM  
Opinions needed: Phi vs GPU in bioinfomatics by yaximik
Started by yaximik, 06-28-2013, 10:45 AM
6 responses
2,314 views
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 Last Post rhinoceros
by rhinoceros
06-29-2013, 01:28 PM  
build a web service for database access by trotos
Started by trotos, 06-29-2013, 08:32 AM
0 responses
1,095 views
0 reactions
 Last Post trotos
by trotos
06-29-2013, 08:32 AM  
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