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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,260 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
Fastqc report by melNGS
Started by melNGS, 07-23-2012, 06:28 AM
3 responses
3,881 views
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 Last Post simonandrews
by simonandrews
07-24-2012, 12:10 AM  
Why is bcftools missing back-to-back/high-divergence-region SNPs (BWA mapping)? by Genomics101
Started by Genomics101, 07-10-2012, 06:36 AM
1 response
2,398 views
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 Last Post Genomics101
by Genomics101
07-23-2012, 01:08 PM  
GATK::The contig index 20 is greater than the stored sequence count (1) by Lessthan3
Started by Lessthan3, 07-23-2012, 11:54 AM
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 Last Post Lessthan3
by Lessthan3
07-23-2012, 11:54 AM  
SOPRA prebuilt contigs bam problem by Aclarar
Started by Aclarar, 07-23-2012, 10:53 AM
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 Last Post Aclarar
by Aclarar
07-23-2012, 10:53 AM  
tophat2 splice sequence has more than 2^32-1 characters by caddymob
Started by caddymob, 07-19-2012, 08:32 AM
1 response
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 Last Post caddymob
by caddymob
07-23-2012, 10:40 AM  
compare structural variation by bair
Started by bair, 06-22-2010, 06:54 AM
1 response
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 Last Post Irsan_Kooi
by Irsan_Kooi
07-23-2012, 09:17 AM  
New to Bioinformatics by Aholton
Started by Aholton, 07-19-2012, 09:05 AM
11 responses
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 Last Post Aholton
by Aholton
07-23-2012, 08:59 AM  
Cuffmerge stopped at Converting GTF files to SAM by zhwang
Started by zhwang, 07-20-2012, 09:06 AM
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 Last Post zhwang
by zhwang
07-23-2012, 08:39 AM  
Cufflinks error message on test data by Sherry
Started by Sherry, 10-14-2010, 10:09 AM
12 responses
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 Last Post Jluis
by Jluis
07-23-2012, 05:02 AM  
snpEff Reference Genome Database by Pepper_and_Tomato
Started by Pepper_and_Tomato, 07-23-2012, 01:23 AM
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 Last Post Pepper_and_Tomato
by Pepper_and_Tomato
07-23-2012, 01:23 AM  
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