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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,259 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
GTF file for reference of human transcriptome by oxydeepu
Started by oxydeepu, 05-25-2012, 12:53 AM
1 response
2,979 views
0 reactions
 Last Post arvid
by arvid
05-25-2012, 03:09 AM  
RNAseq data analysis by chknbio
Started by chknbio, 05-24-2012, 07:45 AM
8 responses
4,737 views
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 Last Post EGrassi
by EGrassi
05-24-2012, 11:44 PM  
Mapping Illumina data with smalt by adippenaar
Started by adippenaar, 05-24-2012, 04:47 AM
1 response
3,069 views
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 Last Post kksiame
by kksiame
05-24-2012, 11:25 PM  
Ancient DNA adaptor removal and read merging by jimmybee
Started by jimmybee, 05-22-2012, 07:59 PM
8 responses
3,422 views
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 Last Post Bucky
by Bucky
05-24-2012, 07:40 PM  
How to do the recalibration of non-human species without good SNP database by Xin Fan
Started by Xin Fan, 05-23-2012, 12:05 PM
3 responses
2,316 views
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 Last Post Xin Fan
by Xin Fan
05-24-2012, 06:01 PM  
Genomic coordinates for amino acid variation ... how ? by niyl_p
Started by niyl_p, 05-24-2012, 02:05 PM
1 response
4,637 views
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 Last Post BAMseek
by BAMseek
05-24-2012, 05:30 PM  
Miseq - third party software by Larrysmith
Started by Larrysmith, 05-24-2012, 03:26 PM
0 responses
29 views
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 Last Post Larrysmith
by Larrysmith
05-24-2012, 03:26 PM  
tophat2 problem: No such file: left_kept_reads.m2g_um.candidates_and_unspl.bam by tgenahmet
Started by tgenahmet, 04-13-2012, 11:57 AM
2 responses
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 Last Post townway
by townway
05-24-2012, 01:42 PM  
Varscan-output interpretation by bioman1
Started by bioman1, 05-24-2012, 12:50 PM
0 responses
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 Last Post bioman1
by bioman1
05-24-2012, 12:50 PM  
Sam 2 ace by jdiezperezj
Started by jdiezperezj, 03-16-2010, 05:54 AM
2 responses
3,127 views
0 reactions
 Last Post sklages
by sklages
05-24-2012, 12:08 PM  
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