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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,259 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
Tophat 2.0.0 and option -r --mate-inner-dist by EGrassi
Started by EGrassi, 05-10-2012, 08:55 AM
1 response
1,833 views
0 reactions
 Last Post EGrassi
by EGrassi
05-11-2012, 01:48 AM  
generating heatmaps of repeat density in genome sequences by bobvanburen
Started by bobvanburen, 05-10-2012, 06:53 AM
1 response
2,251 views
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 Last Post jmw86069
by jmw86069
05-10-2012, 07:15 PM  
Venn diagram type analysis of ~6 conditions by Noa
Started by Noa, 05-09-2012, 04:32 AM
1 response
4,253 views
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 Last Post jmw86069
by jmw86069
05-10-2012, 07:01 PM  
"Global median" function in R/Bioconductor? by shuang
Started by shuang, 05-10-2012, 07:05 AM
1 response
3,174 views
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 Last Post jmw86069
by jmw86069
05-10-2012, 06:27 PM  
Help pls! Data normalization for ChIP-seq under different conditions by lavagirl
Started by lavagirl, 05-07-2012, 03:52 PM
2 responses
3,105 views
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 Last Post lavagirl
by lavagirl
05-10-2012, 04:07 PM  
.bam to .wig conversion by kalidaemon
Started by kalidaemon, 11-02-2010, 06:27 AM
7 responses
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 Last Post anagari
by anagari
05-10-2012, 02:39 PM  
need help--bacterial RNA-seq by wall_y
Started by wall_y, 08-11-2011, 11:01 PM
4 responses
2,901 views
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 Last Post swbarnes2
by swbarnes2
05-10-2012, 12:18 PM  
TopHat, Cufflinks, missing hits? by drdna
Started by drdna, 05-10-2012, 09:16 AM
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 Last Post drdna
by drdna
05-10-2012, 09:16 AM  
Tophat2: bam file has no quality sequences for a lot of reads by duhaimj
Started by duhaimj, 04-26-2012, 10:40 AM
5 responses
3,044 views
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 Last Post QTLdum
by QTLdum
05-10-2012, 07:41 AM  
Mapping genomic regions promoter 3' UTR exon etc by mathew
Started by mathew, 05-10-2012, 06:19 AM
0 responses
1,872 views
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 Last Post mathew
by mathew
05-10-2012, 06:19 AM  
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