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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,262 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
How to deal with no calls from GATK Unifiedgenotyper for indels by audqf
Started by audqf, 01-30-2012, 02:47 PM
2 responses
4,178 views
0 reactions
 Last Post audqf
by audqf
02-01-2012, 03:53 PM  
The best output format for paired-end alignment using bowtie by chedonat
Started by chedonat, 01-31-2012, 07:18 AM
4 responses
4,980 views
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 Last Post gringer
by gringer
02-01-2012, 02:03 PM  
UCSC canonical transcripts with identifiers in GTF by traeki
Started by traeki, 02-01-2012, 02:00 PM
0 responses
2,426 views
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 Last Post traeki
by traeki
02-01-2012, 02:00 PM  
Calculation of pi(a)/pi(s) for sequence data in pileup format by Lisamjb
Started by Lisamjb, 02-01-2012, 01:02 AM
1 response
2,244 views
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 Last Post Dameon
by Dameon
02-01-2012, 01:57 PM  
alignment with bowtie by maria_mari
Started by maria_mari, 02-01-2012, 02:22 AM
1 response
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 Last Post epi
by epi
02-01-2012, 01:19 PM  
GATK excludes some samples for cohort variant calling by liu_xt005
Started by liu_xt005, 01-20-2012, 07:43 AM
2 responses
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 Last Post liu_xt005
by liu_xt005
02-01-2012, 12:58 PM  
vispa by fanping
Started by fanping, 02-01-2012, 12:54 PM
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 Last Post fanping
by fanping
02-01-2012, 12:54 PM  
RNA-seq library prep without poly-A selection by turnersd
Started by turnersd, 01-31-2012, 07:51 AM
5 responses
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 Last Post mediator
by mediator
02-01-2012, 09:48 AM  
what's difference between 'pileup' and 'mpileup' at samtools? by dkrtndhkd
Started by dkrtndhkd, 02-01-2012, 08:58 AM
2 responses
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 Last Post swbarnes2
by swbarnes2
02-01-2012, 09:24 AM  
How IGV recognize the reference region? by dkrtndhkd
Started by dkrtndhkd, 01-31-2012, 08:13 PM
2 responses
1,742 views
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 Last Post dkrtndhkd
by dkrtndhkd
02-01-2012, 08:58 AM  
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