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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
0 reactions
 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,261 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
MIRA assembly with MID barcodes for 454? by raw937
Started by raw937, 06-12-2011, 12:43 PM
4 responses
3,487 views
0 reactions
 Last Post sklages
by sklages
06-14-2011, 11:54 PM  
Need Help, gap between two contigs formed by mapping by ketan_bnf
Started by ketan_bnf, 05-22-2011, 10:50 PM
1 response
2,070 views
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 Last Post Soni
by Soni
06-14-2011, 11:36 PM  
illumina smallRNA adapter sequence for downstram analysis + miRNA analysis steps by ndeshpan
Started by ndeshpan, 06-09-2011, 10:42 PM
2 responses
5,068 views
0 reactions
 Last Post ndeshpan
by ndeshpan
06-14-2011, 09:44 PM  
BWA & Reverse Sequences by dp05yk
Started by dp05yk, 06-14-2011, 07:06 PM
1 response
1,970 views
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 Last Post dp05yk
by dp05yk
06-14-2011, 07:15 PM  
cuffdiff with biological replicates by PFS
Started by PFS, 06-14-2011, 11:07 AM
1 response
4,895 views
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 Last Post shurjo
by shurjo
06-14-2011, 06:51 PM  
Run hundreds of BWA commands without waiting by CNVboy
Started by CNVboy, 06-14-2011, 03:02 PM
5 responses
4,319 views
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 Last Post fpepin
by fpepin
06-14-2011, 05:40 PM  
time series analysis of count data? by greigite
Started by greigite, 06-14-2011, 05:11 PM
0 responses
3,993 views
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 Last Post greigite
by greigite
06-14-2011, 05:11 PM  
bwa aln fred score offset by offsetoff
Started by offsetoff, 06-11-2011, 08:08 AM
1 response
2,636 views
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 Last Post maubp
by maubp
06-14-2011, 02:14 PM  
BWA - sampe max occurrences of a read for pairing by madsaan
Started by madsaan, 06-14-2011, 07:16 AM
1 response
2,471 views
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 Last Post dp05yk
by dp05yk
06-14-2011, 01:48 PM  
.SAM to .BAM with SAM file header @PG by emilyjia2000
Started by emilyjia2000, 05-02-2011, 10:07 AM
13 responses
16,474 views
0 reactions
 Last Post Richard Finney
by Richard Finney
06-14-2011, 12:21 PM  
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