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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,259 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
Finding Alternative splicing events from 454 transcriptome by ketan_bnf
Started by ketan_bnf, 03-16-2011, 10:03 PM
5 responses
3,018 views
0 reactions
 Last Post flxlex
by flxlex
03-26-2011, 03:53 AM  
tophat - solexa options by sohnic
Started by sohnic, 03-24-2011, 08:15 AM
4 responses
4,469 views
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 Last Post sohnic
by sohnic
03-25-2011, 01:30 PM  
cufflinks probem: start pos of exons by cbil
Started by cbil, 03-25-2011, 10:00 AM
2 responses
1,769 views
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 Last Post cbil
by cbil
03-25-2011, 01:20 PM  
calibrated quality string "B" full by Trudy
Started by Trudy, 03-23-2011, 05:43 AM
2 responses
1,635 views
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 Last Post tomc
by tomc
03-25-2011, 10:04 AM  
PICARD reports only unmapped reads by saskak
Started by saskak, 03-25-2011, 01:51 AM
1 response
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 Last Post saskak
by saskak
03-25-2011, 07:50 AM  
Tophat -j option error by cedance
Started by cedance, 03-24-2011, 04:33 AM
1 response
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 Last Post cedance
by cedance
03-25-2011, 05:05 AM  
C++ libraries for NGS data and such by pasta
Started by pasta, 03-17-2011, 02:36 AM
11 responses
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 Last Post pasta
by pasta
03-25-2011, 02:42 AM  
Does bowtie randomly select a match from two equally valid alignments? by Kennels
Started by Kennels, 03-24-2011, 07:39 PM
1 response
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 Last Post Kennels
by Kennels
03-24-2011, 09:12 PM  
fastq to qseq format by seq_GA
Started by seq_GA, 03-24-2011, 07:44 PM
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 Last Post seq_GA
by seq_GA
03-24-2011, 07:44 PM  
Calling tri-allelic SNPs using samtools (or similar) by dagarfield
Started by dagarfield, 03-08-2011, 05:37 PM
5 responses
7,948 views
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 Last Post mrxcm3
by mrxcm3
03-24-2011, 02:44 PM  
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