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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,259 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
bfast for unmapped reads by Protaeus
Started by Protaeus, 11-17-2010, 08:26 AM
2 responses
2,061 views
0 reactions
 Last Post drio
by drio
11-17-2010, 03:35 PM  
samtools for indel by bair
Started by bair, 11-17-2010, 04:50 AM
7 responses
3,073 views
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 Last Post drio
by drio
11-17-2010, 02:51 PM  
which alignment tool allows to anchor pair end reads over repeats? by Inti
Started by Inti, 11-17-2010, 04:55 AM
2 responses
2,752 views
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 Last Post drio
by drio
11-17-2010, 02:48 PM  
How to trim the adaptor sequence from the solexa small RNA sequencing data? by satp
Started by satp, 02-05-2009, 10:51 PM
11 responses
14,992 views
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 Last Post mmartin
by mmartin
11-17-2010, 02:08 PM  
Info about rf vs fr with samtools or other? by Protaeus
Started by Protaeus, 11-17-2010, 12:47 PM
0 responses
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 Last Post Protaeus
by Protaeus
11-17-2010, 12:47 PM  
samtools calmd -r by a11msp
Started by a11msp, 11-17-2010, 10:48 AM
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 Last Post a11msp
by a11msp
11-17-2010, 10:48 AM  
suspicioulsy small numbers by Devo
Started by Devo, 11-17-2010, 10:12 AM
0 responses
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 Last Post Devo
by Devo
11-17-2010, 10:12 AM  
Accepted practices of NGS quality filtering? by gaffa
Started by gaffa, 11-08-2010, 02:16 PM
7 responses
8,767 views
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 Last Post gaffa
by gaffa
11-17-2010, 09:05 AM  
another tophat "could not execute prep_reads" error by James
Started by James, 11-15-2010, 10:05 AM
7 responses
4,768 views
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 Last Post SongLi
by SongLi
11-17-2010, 05:49 AM  
Cufflink's handling of reads by vang42
Started by vang42, 11-17-2010, 05:02 AM
0 responses
2,010 views
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 Last Post vang42
by vang42
11-17-2010, 05:02 AM  
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