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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc
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Started by laura, 05-09-2011, 04:42 AM
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35 responses
107,337 views
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by laura
12-05-2013, 02:37 AM
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Started by sci_guy, 01-23-2008, 11:19 PM
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236 responses
683,097 views
1 reaction
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by ECO
12-25-2009, 06:45 PM
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Started by Jan, 06-07-2010, 11:54 AM
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4 responses
2,963 views
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by Jan
06-07-2010, 02:45 PM
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Started by Bio.X2Y, 05-25-2010, 02:08 PM
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5 responses
8,084 views
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by gtb
06-07-2010, 12:43 PM
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Started by Bio.X2Y, 05-13-2010, 07:39 AM
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4 responses
2,411 views
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by Ben Langmead
06-07-2010, 10:27 AM
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Started by Bio.X2Y, 05-28-2010, 08:15 AM
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1 response
2,537 views
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by Bio.X2Y
06-07-2010, 10:02 AM
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Started by agc, 05-20-2010, 06:01 AM
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3 responses
10,053 views
0 reactions
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by nilshomer
06-07-2010, 09:20 AM
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Started by lakshmaa, 06-07-2010, 05:35 AM
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4 responses
3,736 views
0 reactions
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by lakshmaa
06-07-2010, 07:22 AM
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Started by snp_analyser, 06-07-2010, 06:38 AM
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0 responses
2,694 views
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by snp_analyser
06-07-2010, 06:38 AM
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Started by anecsulea, 06-02-2010, 06:15 AM
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3 responses
4,114 views
0 reactions
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Started by Bio.X2Y, 06-06-2010, 06:58 AM
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2 responses
2,847 views
0 reactions
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by Bio.X2Y
06-06-2010, 10:16 AM
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Started by john_mu, 06-05-2010, 09:47 AM
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2 responses
6,796 views
0 reactions
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Last Post
by john_mu
06-05-2010, 10:40 PM
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by SEQadmin2
Cancer survival rates have significantly increased in the last few decades in the United States, reaching a combined 70% 5-year survival rate by 2021. Behind this number, there are years of research to find new therapies, drug targets, and early detection methods. But there is one core challenge that keeps slowing down these advances, and it’s about drug resistance.
There is no single reason why many patients don’t respond to treatment as expected. Cancer is...-
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by GATTACATLove this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.
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07-01-2026, 11:43 AM -
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by SEQadmin2
I’m not a sequencing expert. I’m a purification scientist who uses NGS to evaluate workflows my group develops. With this perspective, we think about the sample first and the NGS workflow second. The sequencer is an exceptionally honest reporter, but it can only report on what you give it, so whether you get clean, interpretable data from an NGS workflow is largely determined before you begin.
Here are nine questions we think about, in roughly the order they matter, before...-
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