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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,260 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
Vector NTI for windows 10? by Tlexander
Started by Tlexander, 02-09-2016, 09:39 PM
5 responses
6,490 views
0 reactions
 Last Post Rutia
by Rutia
02-14-2016, 06:21 AM  
Sample normalization - ChIP-Seq by DNA_Monk
Started by DNA_Monk, 02-13-2016, 06:01 AM
0 responses
1,295 views
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 Last Post DNA_Monk
by DNA_Monk
02-13-2016, 06:01 AM  
Question about RNA-seq read strand by harrike
Started by harrike, 02-12-2016, 03:53 PM
2 responses
1,545 views
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 Last Post harrike
by harrike
02-12-2016, 10:12 PM  
Need help understanding the method from this paper by antifolate
Started by antifolate, 02-12-2016, 08:57 AM
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3,535 views
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 Last Post antifolate
by antifolate
02-12-2016, 08:57 AM  
CNVnator false positives -- Struggling by dickie_ho
Started by dickie_ho, 02-02-2016, 06:01 PM
4 responses
2,256 views
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 Last Post dickie_ho
by dickie_ho
02-12-2016, 02:42 AM  
A problem with Elastic net + Cox regression by Anastaziel
Started by Anastaziel, 02-11-2016, 03:14 PM
4 responses
2,337 views
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 Last Post Anastaziel
by Anastaziel
02-12-2016, 01:53 AM  
Enable pairing in a bam file separately aligned by lanes by ty23991
Started by ty23991, 02-11-2016, 12:04 PM
5 responses
1,824 views
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 Last Post Brian Bushnell
by Brian Bushnell
02-11-2016, 04:07 PM  
Poor alignment rate by bowtie2 for exome sequence data by ty23991
Started by ty23991, 01-27-2016, 11:28 AM
5 responses
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 Last Post ty23991
by ty23991
02-11-2016, 11:54 AM  
VarScan2 copynumber option error by curious2
Started by curious2, 04-19-2013, 09:23 AM
10 responses
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 Last Post brdido
by brdido
02-11-2016, 04:46 AM  
quantifying RNAseq reads for a genbank isoforme that is not in Reference Annotation by ftmir
Started by ftmir, 02-11-2016, 03:43 AM
0 responses
3,435 views
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 Last Post ftmir
by ftmir
02-11-2016, 03:43 AM  
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