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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,262 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
noob questions regarding alignment of MiSeq data by Azazel
Started by Azazel, 11-26-2012, 10:06 PM
2 responses
2,767 views
0 reactions
 Last Post westerman
by westerman
11-27-2012, 12:35 PM  
tophat-fusion-post 0 fusions are output in ./tophatfusion_out/potential_fusion.txt by RocheKermit
Started by RocheKermit, 11-05-2012, 08:41 AM
1 response
2,753 views
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 Last Post yingzhang
by yingzhang
11-27-2012, 12:24 PM  
Mapping to de novo scaffolds: good BAMs but empty VCFs. Why? by Genomics101
Started by Genomics101, 11-27-2012, 08:20 AM
2 responses
1,677 views
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 Last Post Genomics101
by Genomics101
11-27-2012, 11:35 AM  
distinguish between gigabases and gigabytes: GB? by mattarno
Started by mattarno, 11-23-2012, 08:30 AM
5 responses
5,804 views
0 reactions
 Last Post westerman
by westerman
11-27-2012, 10:52 AM  
SAM: Significance Analysis of Microarrays by Amative
Started by Amative, 11-27-2012, 09:41 AM
0 responses
1,326 views
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 Last Post Amative
by Amative
11-27-2012, 09:41 AM  
Quantitate study of RIN vs degradation rate for poly-A purification libraries? by jstjohn
Started by jstjohn, 11-27-2012, 09:09 AM
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 Last Post jstjohn
by jstjohn
11-27-2012, 09:09 AM  
SAMtools will not compile - help please! by jorhodes
Started by jorhodes, 11-27-2012, 05:02 AM
4 responses
2,378 views
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 Last Post jorhodes
by jorhodes
11-27-2012, 07:40 AM  
peak calling for virus chipseq by honey
Started by honey, 11-27-2012, 06:00 AM
1 response
1,464 views
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 Last Post kopi-o
by kopi-o
11-27-2012, 06:59 AM  
Tophat colorspace problem by Jetse
Started by Jetse, 11-27-2012, 06:47 AM
0 responses
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 Last Post Jetse
by Jetse
11-27-2012, 06:47 AM  
prediction tools for SNPs - grantham scores and phyloP by nans_bn
Started by nans_bn, 11-27-2012, 05:16 AM
0 responses
2,719 views
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 Last Post nans_bn
by nans_bn
11-27-2012, 05:16 AM  
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