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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
0 reactions
 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,260 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
extract_only_concordant_paired_reads_from_bam_file by kostask
Started by kostask, 01-26-2016, 04:02 PM
2 responses
3,161 views
0 reactions
 Last Post kostask
by kostask
01-31-2016, 10:55 AM  
MEGAN - changing query coverage? by tjf516
Started by tjf516, 01-30-2016, 09:15 AM
0 responses
2,810 views
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 Last Post tjf516
by tjf516
01-30-2016, 09:15 AM  
Convert paired-end, longer reads to single-end, shorter reads by mlodato
Started by mlodato, 02-24-2015, 12:46 PM
7 responses
4,098 views
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 Last Post proux
by proux
01-30-2016, 06:47 AM  
filtering variants to just those in CDS by kjmclean
Started by kjmclean, 01-29-2016, 05:24 PM
1 response
1,328 views
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 Last Post HESmith
by HESmith
01-30-2016, 06:01 AM  
E-value of MEME by yu_chem
Started by yu_chem, 01-30-2016, 06:00 AM
0 responses
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 Last Post yu_chem
by yu_chem
01-30-2016, 06:00 AM  
Complexity Time SPADES assembler by mido1951
Started by mido1951, 01-29-2016, 03:17 PM
2 responses
1,736 views
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 Last Post mido1951
by mido1951
01-30-2016, 05:12 AM  
bbduk with a large reference database by danova
Started by danova, 01-28-2016, 01:45 AM
8 responses
4,999 views
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 Last Post Brian Bushnell
by Brian Bushnell
01-29-2016, 09:56 PM  
GAGE pathway analysis (R/Bioconductor): summarizeOverlaps error by user 31888
Started by user 31888, 11-16-2015, 04:18 PM
7 responses
5,112 views
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 Last Post user 31888
by user 31888
01-29-2016, 06:13 PM  
Differentially expressed isoforms with Miso by ninni
Started by ninni, 01-12-2016, 01:26 AM
1 response
1,989 views
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 Last Post gtduarte
by gtduarte
01-29-2016, 03:15 PM  
VarScan filter - parsing exceptions error by syyoo
Started by syyoo, 01-29-2016, 09:52 AM
0 responses
1,861 views
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 Last Post syyoo
by syyoo
01-29-2016, 09:52 AM  
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