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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,259 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
Illumina reads failing to map to bacterial genome with Tophat by C9r1y
Started by C9r1y, 03-08-2013, 04:18 PM
2 responses
3,972 views
0 reactions
 Last Post capricy
by capricy
12-07-2015, 07:51 AM  
Genome assembly of mixed E. coli samples by agmcarthur
Started by agmcarthur, 12-03-2015, 01:10 PM
4 responses
2,828 views
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 Last Post rhinoceros
by rhinoceros
12-07-2015, 06:26 AM  
measuring mutation rates from NGS data by alaminos
Started by alaminos, 12-06-2015, 03:09 AM
1 response
1,591 views
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 Last Post Brian Bushnell
by Brian Bushnell
12-06-2015, 10:50 AM  
RNASeq or WGS for fusion search? by Jane M
Started by Jane M, 12-04-2015, 09:37 AM
2 responses
1,681 views
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 Last Post Jane M
by Jane M
12-06-2015, 03:16 AM  
ribosomal genes in differentially expressed gene list by liux
Started by liux, 12-03-2015, 09:39 AM
2 responses
1,771 views
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 Last Post blancha
by blancha
12-05-2015, 06:13 AM  
GSNAP: (too many?) mismatches in -N mode by hzhou
Started by hzhou, 07-27-2015, 11:36 AM
3 responses
2,288 views
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 Last Post atma_weapon
by atma_weapon
12-04-2015, 03:01 PM  
Data from servers Accessible on IGV by fk566938
Started by fk566938, 12-04-2015, 07:54 AM
1 response
2,100 views
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 Last Post mastal
by mastal
12-04-2015, 08:51 AM  
Mapping and variant calling for hypermutated cancers by Jane M
Started by Jane M, 12-02-2015, 06:00 AM
2 responses
1,483 views
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 Last Post Jane M
by Jane M
12-04-2015, 08:41 AM  
Fungal Genome Assembly... a painful experience by nwfungi
Started by nwfungi, 12-02-2015, 01:19 PM
7 responses
5,498 views
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 Last Post nwfungi
by nwfungi
12-04-2015, 08:05 AM  
Cuffdiff results with frag-bias-correct vary considerably when re-runing by asier_gonzalez
Started by asier_gonzalez, 12-04-2015, 07:28 AM
0 responses
3,871 views
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 Last Post asier_gonzalez
by asier_gonzalez
12-04-2015, 07:28 AM  
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