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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc
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Started by laura, 05-09-2011, 04:42 AM
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35 responses
107,338 views
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by laura
12-05-2013, 02:37 AM
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Started by sci_guy, 01-23-2008, 11:19 PM
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236 responses
683,108 views
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by ECO
12-25-2009, 06:45 PM
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Started by neupanebpn, 06-09-2025, 09:29 AM
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113 views
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by neupanebpn
06-09-2025, 09:29 AM
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9th Berlin Summer School in NGS Data Analysis 2025 (June 30 - July 4, 2025) -- LAST CALL --
by ecSeq Bioinformatics
Started by ecSeq Bioinformatics, 06-01-2025, 11:04 PM
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0 responses
106 views
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How to Extract Standard 7-Level Taxonomy (Kingdom to Species) from SILVA Long Taxonomy Strings?
by salma sarker
Started by salma sarker, 05-30-2025, 03:44 PM
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0 responses
68 views
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by salma sarker
05-30-2025, 03:44 PM
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Immune SNP cluster (IRF5 / STAT4 / TYK2) — Is this worth pushing harder on with my doctor? Hoping for expert insight
by Chromowitch
Started by Chromowitch, 05-17-2025, 12:58 PM
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2 responses
94 views
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by Chromowitch
05-17-2025, 07:15 PM
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Started by RafaellaSB, 03-10-2025, 06:02 PM
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2 responses
866 views
1 reaction
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by SkyWarrior
05-13-2025, 10:40 AM
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Started by rafalwoycicki, 05-04-2025, 12:43 PM
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2 responses
347 views
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Started by ehaag, 04-23-2025, 07:58 PM
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2 responses
83 views
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by ehaag
04-29-2025, 08:19 PM
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Lightweight bash pipeline for ddRADseq read pre-processing, demultiplexing, and de-duplication using cutadapt
by rafalwoycicki
Started by rafalwoycicki, 04-23-2025, 02:12 AM
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2 responses
119 views
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Started by Tahir HB, 03-24-2025, 11:37 AM
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1 response
69 views
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by Tahir HB
03-25-2025, 10:12 AM
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Final Call - Next-Generation Sequencing Data Analysis: A Practical Introduction (April 2-4 in Munich) - Two last seats
by ecSeq Bioinformatics
Started by ecSeq Bioinformatics, 03-18-2025, 12:36 AM
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0 responses
56 views
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by SEQadmin2
Cancer survival rates have significantly increased in the last few decades in the United States, reaching a combined 70% 5-year survival rate by 2021. Behind this number, there are years of research to find new therapies, drug targets, and early detection methods. But there is one core challenge that keeps slowing down these advances, and it’s about drug resistance.
There is no single reason why many patients don’t respond to treatment as expected. Cancer is...-
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by GATTACATLove this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.
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07-01-2026, 11:43 AM -
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by SEQadmin2
I’m not a sequencing expert. I’m a purification scientist who uses NGS to evaluate workflows my group develops. With this perspective, we think about the sample first and the NGS workflow second. The sequencer is an exceptionally honest reporter, but it can only report on what you give it, so whether you get clean, interpretable data from an NGS workflow is largely determined before you begin.
Here are nine questions we think about, in roughly the order they matter, before...-
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Started by SEQadmin2, Yesterday, 10:08 AM
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by SEQadmin2
Yesterday, 10:08 AM
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Started by SEQadmin2, 07-07-2026, 11:05 AM
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by SEQadmin2
07-07-2026, 11:05 AM
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Started by SEQadmin2, 07-02-2026, 11:08 AM
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by SEQadmin2
07-02-2026, 11:08 AM
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