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  • stephenhart
    Member
    • Sep 2011
    • 16
    #1

    edgeR plotting error

    Hello,

    I am analyzing count data from RNAseq and, while I can properly run the differential expression analysis, the plotSmear function fails with the warning

    " Error in log2(x) : Non-numeric argument to mathematical function "

    but when I try to convert the file to make it numeric, I'm told the following

    " Error in lapply(X = X, FUN = FUN, ...) :
    (list) object cannot be coerced to type 'double' "


    Any help would be appreciated.
    Tags: deseq
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