Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • paolo.kunder
    Member
    • Aug 2011
    • 93

    #1

    good viewer for RNA-seq and ChIP-seq data

    Dear All,
    I have to prepare some high quality images of RNA-seq and ChIP-seq data regarding the coverage and histone modifications found in some genes of interest.
    I am not completely satisfied by the quality of IGV output nor by the customization of the tracks,
    I have also tried some others viewer, like IGB or SeqMonk, but with those I even get worst images and the GUI looks horrible to me,
    any suggestions which viewer to use?
    thanks,
    paolo
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142

    #2
    If you have data from one of the genomes available on UCSC you could try exporting the visualization from the Genome Browser (or ensembl).

    Comment

    • Dario1984
      Senior Member
      • Jun 2011
      • 166

      #3
      Savant is more stylish.

      Comment

      Latest Articles

      Collapse

      • SEQadmin2
        Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
        by SEQadmin2



        Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

        Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
        ...
        10-14-2026, 09:55 AM
      • SEQadmin2
        New Genomics Technologies Take Aim at Long-Standing Limits
        by SEQadmin2


        Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

        We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing
        ...
        09-28-2026, 10:25 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by SEQadmin2, Yesterday, 11:13 AM
      0 responses
      19 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, Yesterday, 10:48 AM
      0 responses
      18 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-15-2026, 10:52 AM
      0 responses
      36 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-14-2026, 05:39 AM
      0 responses
      42 views
      0 reactions
      Last Post SEQadmin2  
      Working...