good viewer for RNA-seq and ChIP-seq data

paolo.kunder

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Join Date: Aug 2011

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#1

good viewer for RNA-seq and ChIP-seq data

01-17-2013, 06:02 AM

Dear All,
I have to prepare some high quality images of RNA-seq and ChIP-seq data regarding the coverage and histone modifications found in some genes of interest.
I am not completely satisfied by the quality of IGV output nor by the customization of the tracks,
I have also tried some others viewer, like IGB or SeqMonk, but with those I even get worst images and the GUI looks horrible to me,
any suggestions which viewer to use?
thanks,
paolo
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GenoMax

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01-17-2013, 08:47 AM

If you have data from one of the genomes available on UCSC you could try exporting the visualization from the Genome Browser (or ensembl).
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Dario1984

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01-17-2013, 10:00 PM

Savant is more stylish.
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good viewer for RNA-seq and ChIP-seq data

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