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  • dkatzel
    Junior Member
    • Mar 2013
    • 5
    #1

    Does anyone do contig analysis in Java?

    Does anyone do contig analysis (code coverage, SNP/ variation detection, assembly error detection etc) using software written in Java? Software libraries like BioJava don't appear to have built-in support for contigs or assembly file formats.

    What do you all do once you have your .ace or .asm file?
    Tags: biojava, contig, java
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