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I am trying to test out some visualization software I am working on and I need an example GWAS data set. I am looking for a file coordinates and p-values (bed or vcf). I don't want to have to do the analysis just the plotting. Anyone know where I can find such a file? Thanks in advance.
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Catalog of published GWAS studies: https://www.genome.gov/26525384 -
Thanks. That is very helpful. I am looking through those studies one by for a supplemental file that contains the info i am looking for. I want all SNPs not just significant ones.
So if anyone has such a file I am still looking for it.Comment
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Data variability is still an issue in sequencing technologies despite the advances in reproducibility and accuracy of these platforms. But the problem does not originate in the sequencing itself, but in the previous steps, before the sample reaches the sequencer.
The first step is collection, followed by preservation and sample preparation for analysis. Most scientists overlook those steps, but not being careful might just be skewing the experiment’s results.
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Introduction
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