converting fasta/fa files to fastq

[kaps]

Hello I seen a script on this link https://code.google.com/p/fasta-to-fastq/ that converts fasta to fastq either as standalone or unix workflow.

How can use I it either as standalone or unix?

[GenoMax]

You can use reformat.sh from BBMap to assign fake Q-scores to a fasta file to convert it to fastq.

$ reformat.sh in=test.fa out=fake.fq qfake=35

[GenoMax]

Hello I seen a script on this link https://code.google.com/p/fasta-to-fastq/ that converts fasta to fastq either as standalone or unix workflow.

How can use I it either as standalone or unix?

You can download the script from here: https://code.google.com/p/fasta-to-f...ta_to_fastq.pl Use wget or curl with this link: https://fasta-to-fastq.googlecode.co...ta_to_fastq.pl

$ wget https://fasta-to-fastq.googlecode.com/files/fasta_to_fastq.pl

Add execute permissions to it on server

$ chmod u+x fasta_to_fastq.pl

And then run it

$ perl fasta_to_fastq.pl reads.fasta > my_converted_fasta.fq

[kaps]

You can download the script from here: https://code.google.com/p/fasta-to-f...ta_to_fastq.pl Use wget or curl with this link: https://fasta-to-fastq.googlecode.co...ta_to_fastq.pl

$ wget https://fasta-to-fastq.googlecode.com/files/fasta_to_fastq.pl

Add execute permissions to it on server

$ chmod u+x fasta_to_fastq.pl

And then run it

$ perl fasta_to_fastq.pl reads.fasta > my_converted_fasta.fq

its working well

Thanks