Hello I seen a script on this link https://code.google.com/p/fasta-to-fastq/ that converts fasta to fastq either as standalone or unix workflow.
How can use I it either as standalone or unix?
How can use I it either as standalone or unix?
-
-
You can use reformat.sh from BBMap to assign fake Q-scores to a fasta file to convert it to fastq.
Code:$ reformat.sh in=test.fa out=fake.fq qfake=35
-
You can download the script from here: https://code.google.com/p/fasta-to-f...ta_to_fastq.pl Use wget or curl with this link: https://fasta-to-fastq.googlecode.co...ta_to_fastq.plOriginally posted by kaps View Post
Add execute permissions to it on serverCode:$ wget https://fasta-to-fastq.googlecode.com/files/fasta_to_fastq.pl
And then run itCode:$ chmod u+x fasta_to_fastq.pl
Code:$ perl fasta_to_fastq.pl reads.fasta > my_converted_fasta.fq
Comment
-
-
The immune system’s power comes from its genetic diversity, allowing myriad threats to be neutralized through first recognizing foreign antigens. That diversity is also what makes the immune system so difficult to study. Recent advances in sequencing technology and computational biology, however, are giving researchers new tools to understand immune responses and immune-related diseases in greater detail.
This convergence of genetics, immunology, and computation...09-01-2026, 05:41 AM
Comment