Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • Alagurajvelu
    Junior Member
    • Apr 2011
    • 6

    #1

    Hosting chipseq data

    Hello,
    We have generated few chipseq data on Arabidopsis thaliana. I want to host my WIG files for reviewers of our manuscript to view the data. Is there any genome browser available (public server/program) to host our data ?. UCSC allows genome data to be hosted on their server for four months. But Arabidopsis thaliana is not available on their server. Is there a better way to disseminate the data ?.
    Thanks,
    Alaguraj Veluchamy
  • gsgs
    Senior Member
    • Oct 2009
    • 139

    #2
    just put it on some website and take care that it will be found if someone
    types the suitable keywords into a search engine.

    Suppose, you wanted to find the data of some similar species,
    for what keywords would you search ?

    let's collect keywords here ...

    [the first 20 nucleotides of chromosome 1] ?


    plus some pages that contain collections of links to genomes data


    ----------------------------------------
    found this:
    Thale cress (Arabidopsis thaliana), ecotype: Columbia, TAIR10, GCA_000001735.1

    https://www.arabidopsis.org/portals/...e_snapshot.jsp
    Last edited by gsgs; 12-24-2015, 01:06 AM.

    Comment

    • Alagurajvelu
      Junior Member
      • Apr 2011
      • 6

      #3
      I am talking about genome browser (not a simple downloadable text file). A genome browser will have complete genome with all annotation. Our wig file will viewable as graph in that browser. I am talking about shareable session (https://genome.ucsc.edu/goldenPath/h...ssionHelp.html). Just look into the "Lifespan of a Session" in that link. In this session, we can load our wig data into already existing annotation and then share it to others. Do we have that kind for arabidopsis ?.

      Comment

      • epigenereg
        Junior Member
        • Dec 2015
        • 5

        #4
        I think the common practice (and for many journals a requirement) is to upload the data to GEO or alternative web archives, and give the referees access to this submission. If the referees want to view the data in whatever genome browser they like, they will find a way.

        Comment

        Latest Articles

        Collapse

        • SEQadmin2
          Beyond CRISPR/Cas9: Understand, Choose, and Use the Right Genome Editing Tool
          by SEQadmin2



          CRISPR/Cas9 sparked the gene editing revolution for both research and therapeutics.1 But this system still showed severe issues that limited its applications. The most prominent were the heavy reliance on PAM sequences, delivery limitations, double-stranded breaks that prompt unintended edits and cell death, and editing inefficiency (both in targeting and in knock-in reliability).

          Despite this, “CRISPR helped turn genome editing from a specialized technique into
          ...
          07-31-2026, 11:01 AM
        • SEQadmin2
          Proteomic Platforms: How to Choose the Right Analytical Strategy to Improve Detection and Clinical Applications
          by SEQadmin2


          Proteomics platforms are evolving rapidly, with advances in mass spectrometry and affinity-based approaches expanding what researchers can detect and at what scale. As the field moves toward deeper proteome coverage and clinical applications, scientists face an increasingly complex landscape of tools. This article will explore how researchers are navigating these choices to find the right platform for their work.

          The systematic characterization of the human proteome has
          ...
          07-20-2026, 11:48 AM

        ad_right_rmr

        Collapse

        News

        Collapse

        Topics Statistics Last Post
        Started by SEQadmin2, Yesterday, 12:22 PM
        0 responses
        12 views
        0 reactions
        Last Post SEQadmin2  
        Started by SEQadmin2, 08-11-2026, 10:35 AM
        0 responses
        14 views
        0 reactions
        Last Post SEQadmin2  
        Started by SEQadmin2, 08-06-2026, 07:41 AM
        0 responses
        31 views
        0 reactions
        Last Post SEQadmin2  
        Started by SEQadmin2, 08-03-2026, 10:13 AM
        0 responses
        49 views
        0 reactions
        Last Post SEQadmin2  
        Working...