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  • Human Body Map data?

    Hi,
    do you know where to find data from illumina's human body map project?
    I don't think there is anything publicly available, but just in case..
    thanks,
    s.

  • #2
    They are incorporated in the IGV (Integrative Genomics Viewer).

    Comment


    • #3
      Originally posted by yinshe View Post
      They are incorporated in the IGV (Integrative Genomics Viewer).
      Really! Do you have a link or resource to help explain that more?
      --
      bioinfosm

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      • #4
        Here is the link:

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        • #5
          Here is the link:



          The data is under hg18 genome.

          Comment


          • #6
            Originally posted by yinshe View Post
            They are incorporated in the IGV (Integrative Genomics Viewer).
            All I could find is hosted genomes: http://www.broadinstitute.org/igv/Genomes
            --
            bioinfosm

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            • #7
              I don´t know where is talking about this in the web page. Please try to install it in your computer and keep your computer online. Using human hg18 genome on the upper left. From "File", select "load from server", a new window will pop up. The last option is "Body Map 2.0".

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              • #8
                OK, i got it. Yinshe is right, you can download it from the IGV interface.

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                • #9
                  Originally posted by yinshe View Post
                  I don´t know where is talking about this in the web page. Please try to install it in your computer and keep your computer online. Using human hg18 genome on the upper left. From "File", select "load from server", a new window will pop up. The last option is "Body Map 2.0".
                  Oh thats what you meant. I can find it now. Thanks!
                  --
                  bioinfosm

                  Comment


                  • #10
                    It can also be downloaded without IGV:
                    /

                    -- update: not any more
                    Last edited by steven; 08-16-2011, 09:56 AM. Reason: That url should not be disclosed

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                    • #11
                      Are there anyway we can download raw read or the raw alignment not the graphical one?

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                      • #12
                        Hi, I think you might be able to get them from Ensemble. We (the IGV team) do not have permission to redistribute the BAM files. You could also ask Illumina.

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                        • #13
                          thank you very much Jim.

                          Comment


                          • #14
                            Originally posted by Jim Robinson View Post
                            Hi, I think you might be able to get them from Ensemble. We (the IGV team) do not have permission to redistribute the BAM files. You could also ask Illumina.
                            Sorry Jim for having posted that information, I did not know I was not supposed to. I hope no harm was done.

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                            • #15
                              I think it should be okay Steven. Your link is blocked for me and probably for others. I think you can remove that post to secure that no one can find the way to access it.

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