Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • puneet_shivanand
    Junior Member
    • Oct 2017
    • 2

    #1

    1000 genomes data format

    Hello, Can i get a brief overview on data that is stored in 1000 genomes phase 3 dataset for a single sample name such as HG00113 there a multitude of fastq paired end reads in their ftp server

    ERR020088_1.filt.fastq.gz 24.6 GB
    ERR020088_2.filt.fastq.gz 24.7 GB
    ERR229776.filt.fastq.gz 360 MB
    ERR229776_1.filt.fastq.gz 9.4 GB
    ERR229776_2.filt.fastq.gz 9.7 GB
    SRR070517.filt.fastq.gz 7.4 MB
    SRR070517_1.filt.fastq.gz 2.2 GB
    SRR070517_2.filt.fastq.gz 2.3 GB
    SRR070802.filt.fastq.gz 6.8 MB
    SRR070802_1.filt.fastq.gz 2.2 GB
    SRR070802_2.filt.fastq.gz 2.3 GB

    can someone explain as how to interpret the data is it the same sample or different samples that are included in the same run accession.

    why do i get multiple set of paired end reads ??
    Last edited by puneet_shivanand; 11-02-2017, 09:07 PM.

Latest Articles

Collapse

  • kinpict.com
    Reply to 16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
    by kinpict.com
    The part about this topic feels surprisingly grounded, and the details on the page is the bit that made me slow down. I’d keep <a href="https://kinpict.com/">ai family photo generator</a> bookmarked for later.
    Today, 06:37 PM
  • SEQadmin2
    16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
    by SEQadmin2





    NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification,...
    10-30-2026, 06:46 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by SEQadmin2, 11-12-2026, 07:59 AM
0 responses
27 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 11-05-2026, 09:25 AM
0 responses
35 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 11-03-2026, 11:54 AM
2 responses
56 views
0 reactions
Last Post kinpict.com  
Started by SEQadmin2, 10-28-2026, 09:57 AM
0 responses
175 views
0 reactions
Last Post SEQadmin2  
Working...