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1000 genomes data format
Hello, Can i get a brief overview on data that is stored in 1000 genomes phase 3 dataset for a single sample name such as HG00113 there a multitude of...Last edited by puneet_shivanand; 11-02-2017, 09:07 PM. -
Filter out 1000 Genomes SNPs from our RNASeq data?
We have RNAseq variant data for 12 tumour samples. We don't have matched non-tumour samples (to filter out germline mutations), so would like to use... -
1000 genomes fastq files
Does 1000 genomes provide sequenced genomes in the form of fastq or fq with base pair length >= 70 and >= 30 coverage? Thanks! -
Download bam region from 1000 genome project
Hi,
I am trying to download only one (or more) region from a bam file from the 1000 Genome Project without having to download the whole file....Last edited by marco12345; 10-15-2014, 01:54 AM. -
Filter VCF using external Allele Frequency
Hello,
I would like to filter large multi-sample VCFs using allele frequencies obtained from VCFs or tab files from the EVS and 1000G datasets.... -
1000genomes SRR107002.filt.fastq.gz bad format?
The first few lines of ftp://ftp.1000genomes.ebi.ac.uk/vol1....filt.fastq.gz are:
@SRR010375.1 VAB_S0083_BCM_20080731_1_Pilot_2_YRI_Fragment2199_1705_1499... -
Annovar annotation with 1000g
Hello everyone,
I have recently downloaded Annovar, and succesfully filtered my files with a few databases, downloaded from Annovar.... -
Seeking advice for Amazon Web Services usage
I have been searching for some specific sequences in the 1000 Genomes Project data, using samtools view and BreakSeq, until the IT services in my University... -
Missing FASTQ files in European 1KGP trio?
I think that some FASTQ files containing exome reads from the European trio in the 1KGP project are missing.
Read groups in an exome file... -
Exome Sequencing data
Hi,
This might be a naive question, but I am looking to download and analyze some exome sequencing data from the 1000 genome project website.... -
dwgsim to simulate Illumina reads
Hello, I want to use dwgsim to simulate Illumina reads from the 1000 Genomes Project. I am particularly interested in individual NA12878.
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Truncated BAM files from 1000GP
I got this error message from SAMTOOLS:
samtools view -q 30 NA12878.chrom1.SLX.maq.SRP000032.2009_07.bam 1:532036-533055
[bam_header_read]... -
Mapping reference genome to ensembl identifier
I am trying to map ensembl identifiers to the reference genome GRCh 37. I am kind of confused as to which database to access for this. The file in question... -
bam files of exomes from 1000 genomes
Hi everybody,
I'm working with some exome sequencing data. I'd like to compare my results with data from 1000 genomes project. I have not found...Last edited by jorjial; 06-02-2011, 07:23 AM. -
Understanding BAM format.
Hi,
I have this output in BAM format.
(This is data from the 1000 genomics project.)
I'm constructing...Last edited by Joker!sAce; 02-28-2011, 07:15 AM.
