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  • est_jop
    Junior Member
    • Jun 2012
    • 2
    #1

    another beginner

    Hello
    My name is Joseph, I am new to here, and also new to bioinformatics.
    I am working on splice site prediction and I tested my method only on Yeast chromosome II, and I want to compare my method result with some other algorithm; I just don't find another method tested on Yeast.

    I have found a method tested on Orthomyxoviridae viruse (IFA7, IFA8, IFB8, IFC7, ISAV7, Tho6), but I don't know how to access these sequences, any idea?

    Thanks
    Tags: splice sites
  • est_jop
    Junior Member
    • Jun 2012
    • 2
    #2
    anybody there?!!!

    Comment

    • nilshomer
      Nils Homer
      • Nov 2008
      • 1283
      #3
      Sorry, I don't know. Perhaps ask your adviser?

      Comment

      • HESmith
        Senior Member
        • Oct 2009
        • 512
        #4
        By yeast, do you mean S. cerevisiae? Very few of its genes are spliced, which is probably why you can't find other analyses for comparison.

        A number of tools for splice site prediction have been published, and many have been evaluated on publicly available data sets. I suggest you start there.

        Comment

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