Hi,
I am new to this firld og NGS data analysis. I have just started working with de novo transcriptome assembly and came across many assemblers available like SOAP de novo, velvet, ABySS etc.
Which assembler is best to be used for paired end ILLUMINA sequencing data (90bp Reads).
How can I choose between K-mer lengths?
Your answers and help would be appreciated.
I am new to this firld og NGS data analysis. I have just started working with de novo transcriptome assembly and came across many assemblers available like SOAP de novo, velvet, ABySS etc.
Which assembler is best to be used for paired end ILLUMINA sequencing data (90bp Reads).
How can I choose between K-mer lengths?
Your answers and help would be appreciated.
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