I have MeDIP-seq reads for each chromosome and the resolution is 100 bp. My questions is how can I plot read counts vs genes of interests. From USCS browser, I can get location of these genes and their coordinate on the chromosome.
Take for example data on chr1 looks like this:
0 20 0 0 35 0 0 ....
data is recorded after each 100 base pair. But I dont know how to map my read counts to chromosome coordinates. I'm also using matlab.
I'm new to this field and any help or suggestion will be greatly appreciated!
Amy-
Take for example data on chr1 looks like this:
0 20 0 0 35 0 0 ....
data is recorded after each 100 base pair. But I dont know how to map my read counts to chromosome coordinates. I'm also using matlab.
I'm new to this field and any help or suggestion will be greatly appreciated!
Amy-