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  • De novo transcriptome assemblers for Illumina Mi-Seq data

    Hi everyone, i'm glad to be part of this comunity.

    I'm new in the world of analyze de novo transcriptome data, in the lab we have an Illumina Mi-Seq sequencer and i would like to ask you, what de novo assemblers of transcriptome do you know? hopefully free-software.

    regards!

  • #2
    the main ones are Oases and Trinity

    Comment


    • #3
      I would echo mastal's recommendations and also add SOAPdenovo-Trans (http://soap.genomics.org.cn/SOAPdenovo-Trans.html)

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      • #4
        Mira also works for Illumina

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        • #5
          Thanks everyone!

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