With a clean install :
But again:
Any ideas?
Code:
Decompressing /tmp/bcl2fastq-1.8.4/src/../redist/cmake-2.8.4.tar.gz
---------------------------------------------
CMake 2.8.4, Copyright 2000-2009 Kitware, Inc.
C compiler on this system is: /compilers/gcc/4.5/bin/gcc
C++ compiler on this system is: /compilers/gcc/4.5/bin/g++
Makefile processor on this system is: gmake
/compilers/gcc/4.5/bin/g++ is GNU compiler
/compilers/gcc/4.5/bin/g++ has STL in std:: namespace
/compilers/gcc/4.5/bin/g++ has ANSI streams
/compilers/gcc/4.5/bin/g++ has streams in std:: namespace
/compilers/gcc/4.5/bin/g++ has sstream
/compilers/gcc/4.5/bin/g++ has operator!=(string, char*)
/compilers/gcc/4.5/bin/g++ has stl iterator_traits
/compilers/gcc/4.5/bin/g++ has standard template allocator
/compilers/gcc/4.5/bin/g++ has allocator<>::rebind<>
/compilers/gcc/4.5/bin/g++ does not have non-standard allocator<>::max_size argument
/compilers/gcc/4.5/bin/g++ has stl containers supporting allocator objects
/compilers/gcc/4.5/bin/g++ has header cstddef
/compilers/gcc/4.5/bin/g++ requires template friends to use <>
/compilers/gcc/4.5/bin/g++ supports member templates
/compilers/gcc/4.5/bin/g++ has standard template specialization syntax
/compilers/gcc/4.5/bin/g++ has argument dependent lookup
/compilers/gcc/4.5/bin/g++ has struct stat with st_mtim member
/compilers/gcc/4.5/bin/g++ has ios::binary openmode
/compilers/gcc/4.5/bin/g++ has ANSI for scoping
---------------------------------------------
...
Cleaning up /tmp/bcl2fastq-1.8.4-build/bootstrap/build/cmake-2.8.4
CMake installed successfully
Using installed /tmp/bcl2fastq-1.8.4-build/bootstrap/bin/cmake
-- The C compiler identification is GNU
-- The CXX compiler identification is GNU
-- Check for working C compiler: /compilers/gcc/4.5/bin/gcc
-- Check for working C compiler: /compilers/gcc/4.5/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /compilers/gcc/4.5/bin/g++
-- Check for working CXX compiler: /compilers/gcc/4.5/bin/g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- install prefix: /software/bcl2fastq/bcl2fastq-1.8.4
-- install exec prefix: .
-- install bin dir: ./bin
-- install lib dir: ./lib/bcl2fastq-1.8.4
-- install libexec dir: ./libexec/bcl2fastq-1.8.4
-- install include dir: include/bcl2fastq-1.8.4
-- install data dir: share/bcl2fastq-1.8.4
-- install doc dir: doc/bcl2fastq-1.8.4
-- install man dir: man
-- Verifying target directories access
-- Creating external tools in subdirectory opt
-- Could NOT find Boost
-- Boost 1.44.0 not found. Boost will be built from the distribution...
Decompressing /tmp/bcl2fastq-1.8.4/src/../redist/boost_1_44_0.tar.gz
Building Boost.Jam with toolset gcc... tools/jam/src/bin.linuxx86_64/bjam
Unicode/ICU support for Boost.Regex?... not found.
Generating Boost.Build configuration in project-config.jam...
Bootstrapping is done. To build, run:
./bjam
To adjust configuration, edit 'project-config.jam'.
Further information:
- Command line help:
./bjam --help
- Getting started guide:
http://www.boost.org/more/getting_started/unix-variants.html
- Boost.Build documentation:
http://www.boost.org/boost-build2/doc/html/index.html
...found 14 targets...
...updating 8 targets...
common.mkdir bin.v2
common.mkdir bin.v2/libs
common.mkdir bin.v2/libs/regex
common.mkdir bin.v2/libs/regex/build
common.mkdir bin.v2/libs/regex/build/gcc-4.5.4
common.mkdir bin.v2/libs/regex/build/gcc-4.5.4/debug
gcc.compile.c++ bin.v2/libs/regex/build/gcc-4.5.4/debug/has_icu_test.o
libs/regex/build/has_icu_test.cpp:12:30: erreur fatale: unicode/uversion.h : Aucun fichier ou dossier de ce type
compilation terminée.
"g++" -ftemplate-depth-128 -O0 -fno-inline -Wall -g -fPIC -DBOOST_ALL_NO_LIB=1 -DBOOST_HAS_ICU=1 -I"." -c -o "bin.v2/libs/regex/build/gcc-4.5.4/debug/has_icu_test.o" "libs/regex/build/has_icu_test.cpp"
...failed gcc.compile.c++ bin.v2/libs/regex/build/gcc-4.5.4/debug/has_icu_test.o...
...skipped <pbin.v2/libs/regex/build/gcc-4.5.4/debug>has_icu for lack of <pbin.v2/libs/regex/build/gcc-4.5.4/debug>has_icu_test.o...
...failed updating 1 target...
...skipped 1 target...
...updated 6 targets...
Performing configuration checks
- has_icu builds : no
Component configuration:
- date_time : building
- filesystem : building
- graph : not building
- graph_parallel : not building
- iostreams : building
- math : not building
- mpi : not building
- program_options : building
- python : not building
- random : not building
- regex : building
- serialization : building
- signals : not building
- system : building
- test : not building
- thread : building
- wave : not building
...patience...
...
...patience...
...found 17154 targets...
...updating 8274 targets...
...
...updated 8274 targets...
boost-1_44_0 installed successfully
-- Successfuly built boost 1.44.0 from the distribution package...
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Looking for floorf
-- Looking for floorf - found
-- Looking for round
-- Looking for round - found
-- Looking for roundf
-- Looking for roundf - found
-- Looking for powf
-- Looking for powf - found
-- Looking for erf
-- Looking for erf - found
-- Looking for erf
-- Looking for erf - found
-- Looking for erfc
-- Looking for erfc - found
-- Looking for erfc
-- Looking for erfc - found
-- All libraries will be statically linked
-- Found ZLIB header: /usr/include/zlib.h
-- Found ZLIB library: /usr/lib64/libz.a
-- gzip compression supported
CMake Error at cmake/cxxConfigure.cmake:84 (message):
No support for bzip2 compression
Call Stack (most recent call first):
c++/CMakeLists.txt:33 (include)
-- Configuring incomplete, errors occurred!
Code:
$ rpm -qa | grep bzip bzip2-1.0.5-7.el6_0.x86_64 bzip2-libs-1.0.5-7.el6_0.x86_64 bzip2-devel-1.0.5-7.el6_0.x86_64
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