Ask your FAS's about the super wash protocol for NextSeqs, it is not part of the normal maintenance and I haven't seen much written on it yet. But it worked wonders on our NextSeq when we were having problems with PF and low Q30
Seqanswers Leaderboard Ad
Collapse
Announcement
Collapse
No announcement yet.
X
-
sorry for the late response, I used to get emails when someone answered the post. I don't have specific before and after because the several runs before the super wash were abysmal, since the wash (and since doing it again after our PFs started to slip) we expect to get > 80% PF at the 250K/mm2 with > 80 Q30
The protocol is a little complicated because you have to manually edit a config file and do a series of longish (90') washes with decreasing concentrations of bleach. We do 1.2% then 0.12% then two tween washes--takes all day. If your FAS can't help I can write out our protocol
Comment
Latest Articles
Collapse
-
by seqadmin
The sequencing world is rapidly changing due to declining costs, enhanced accuracies, and the advent of newer, cutting-edge instruments. Equally important to these developments are improvements in sequencing analysis, a process that converts vast amounts of raw data into a comprehensible and meaningful form. This complex task requires expertise and the right analysis tools. In this article, we highlight the progress and innovation in sequencing analysis by reviewing several of the...-
Channel: Articles
Today, 07:48 AM -
-
by seqadmin
The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...-
Channel: Articles
04-22-2024, 07:01 AM -
ad_right_rmr
Collapse
News
Collapse
Topics | Statistics | Last Post | ||
---|---|---|---|---|
Started by seqadmin, Today, 07:17 AM
|
0 responses
11 views
0 likes
|
Last Post
by seqadmin
Today, 07:17 AM
|
||
Started by seqadmin, 05-02-2024, 08:06 AM
|
0 responses
19 views
0 likes
|
Last Post
by seqadmin
05-02-2024, 08:06 AM
|
||
Started by seqadmin, 04-30-2024, 12:17 PM
|
0 responses
20 views
0 likes
|
Last Post
by seqadmin
04-30-2024, 12:17 PM
|
||
Started by seqadmin, 04-29-2024, 10:49 AM
|
0 responses
28 views
0 likes
|
Last Post
by seqadmin
04-29-2024, 10:49 AM
|
Comment