is there a consensus sequence from Miseq files? the data has thousnds of reads, but can I get one fasta/fastq file of the consensus sequence ?
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The answer is "probably not." But it depends on what you are talking about here.Originally posted by REM View Post
What do you mean by "MiSeq files"? A MiSeq can be configured to run informatics pipelines of various types on instrument. Data from the instrument can be shared with Illumina's informatics cloud space, "BaseSpace". There are a number of informatics analysis programs available there as well.
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Phillip
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NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification,...10-30-2026, 06:46 AM
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