Hey everyone keen on 450K analysis,
in the 450K release paper (Bibikova 2011) one reads that 25,978 of the 27,578 probes from 27k array are converted to Infinium II design.
However, when scanning the manifest file of 450k, I see 135,501 Inf I and 350,076 Inf II probes. That surprised me because, they do not mention in the paper that they added other CpG loci with Inf I design.
Can anyone clear up my confusion? And point out an official statement (paper or others) for that?
Thanks in advance
in the 450K release paper (Bibikova 2011) one reads that 25,978 of the 27,578 probes from 27k array are converted to Infinium II design.
However, when scanning the manifest file of 450k, I see 135,501 Inf I and 350,076 Inf II probes. That surprised me because, they do not mention in the paper that they added other CpG loci with Inf I design.
Can anyone clear up my confusion? And point out an official statement (paper or others) for that?
Thanks in advance