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  • g3n3
    Junior Member
    • Jan 2013
    • 6

    #1

    Time to run variant caller plugin for Ion Torrent

    I want to process some mouse genomes on an ion torrent with a 10G chip and I'd like to use the variant caller plugin. Does anyone have any idea how long that could take to run on one of their servers?
    Thank you!
  • jonathanjacobs
    Member
    • Apr 2011
    • 23

    #2
    The PGM doesn't have a 10G chip.

    Do you mean the Proton system? That will get you about 100M reads at 200bp; should take a couple of hours on the hardware that ships with the Proton (if you use the Life Tech variant caller).
    @bioinformer
    http://www.linkedin.com/in/jonathanjacobs

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    • lwhitmore
      Member
      • Aug 2013
      • 70

      #3
      Torrent Suite for Mac

      I was also wondering if there is any manuals or anything about how to use the torrent suite modules such as the analysis module

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