need suggestions for PGM QC data

[cybog337]

Hi all,

This is Andrew and need any suggestions against attached seq QC data.

Recently, I got cancer panel service from a company, and I found that seq process was not good.

If the quality of seq data is fine and suitable for finding somatic mutation, I will use this.
But not, I will request re-run of my sample.

My opinion is this data is not good and it is better to do re-run, and any opinion is welcome.

Hope many suggestion and best reagards,


cybog337,

[snetmcom]

That is not an ideal run, but it looks like you have enough reads for most of the samples. I would only run again if you need more coverage.