Announcement

Collapse

Welcome to the New Seqanswers!

Welcome to the new Seqanswers! We'd love your feedback, please post any you have to this topic: New Seqanswers Feedback.
See more
See less

SNP detection in Draft genomes

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • SNP detection in Draft genomes

    Hi all,
    We have sequenced a Bacteria on Ion PGM platform for Denovo sequencing. We did get a good scaffold data.

    Our next aim is to take this as a reference sequence and compare it with remaining samples which were also sequenced on IonPGM.

    Now do i have to order the contigs or scaffolds and then go for SNP search?
    What are the tools which can be used for SNP predictions from draft genomes?
    How do we annotate these SNP's?

    Thanks in advance,

    Ramya
Working...
X