[carolW]

15G. but I had expected that if there is no enough mem, a msg will be displayed. when I ran without all params like tmap index -f ~/ucscHg19/hg19.fa, no file was created and no msg was displayed. will run it on a machine with a larger RAM

Thanks

[skbrimer]

Hi carolW, I am not sure how to help you anymore, you have run out of my experience but I do have a few suggestions.

1.) if you have acess (you or someone) to the torrent server hg19 is already installed under /results/analysis/output/tmap-f3/hg19 and you could just copy those files to your machine.

2.) try it on a larger machine

3.) try asking for advice on the torrent community or the github repo both are monitored by the developers so they should be able to help you.

Again, I'm sorry I could not be more helpful, I just have never ran into that problem.