Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • carolW
    Senior Member
    • Apr 2013
    • 103

    #1

    BaseCaller program

    it might be trivial but how the barcode file should be created for BaseCaller program invoked on command line?

    I have created a file as follows

    seq1,ACGT,
    seq2,TGCA,ATA

    but I get an err msg

    BarcodeDatasets: Unknown entry in barcode list file: id_str,sequence,adapter

    Moreover, the 1.wells files are in different directory
    sigproc_results/block_X*

    If I specify -i sigproc_results/block_X*

    I get
    Error - Unknown arguments:sigproc_results/block_X0_Y1332
    and the list of all directories matching sigproc_results/block_X*

    As all 1.wells files are not in a single dir, how to specify -i?


    Thanks
    Last edited by carolW; 03-04-2016, 05:35 AM.

Latest Articles

Collapse

  • SEQadmin2
    Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
    by SEQadmin2



    Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

    Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
    ...
    10-14-2026, 09:55 AM
  • SEQadmin2
    New Genomics Technologies Take Aim at Long-Standing Limits
    by SEQadmin2


    Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

    We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing
    ...
    09-28-2026, 10:25 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by SEQadmin2, 10-22-2026, 11:13 AM
0 responses
23 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 10-22-2026, 10:48 AM
0 responses
20 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 10-15-2026, 10:52 AM
0 responses
36 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 10-14-2026, 05:39 AM
0 responses
42 views
0 reactions
Last Post SEQadmin2  
Working...