Does exists some repository with bam/fastq files?

[paumarc]

Hi everybody

I am trying to set up a pipeline for detecting large gene deletions. I think the samples that I am testing don't contain this kind of deletions. I would like to test the pipeline with a well-known sample. There is some repository where to download files that i could use?

thanks

[mastal]

The ENA and the SRA.

http://www.ebi.ac.uk/ena

http://www.ncbi.nlm.nih.gov/sra

You coud try some well-studied samples from the 1000 genomes project.

http://www.1000genomes.org/