The "--outputSummary" option can be used to generate a list of ZMWs with an associated score, and boolean for passing filter.
Is the data from an amplified sample? Default HGAP parameters should filter out all stochastic artifacts, I would be concerned about simply filtering out systematic artifacts without understanding where they are coming from. They are not normally observed in sheared genomic DNA sequencing.
Is the data from an amplified sample? Default HGAP parameters should filter out all stochastic artifacts, I would be concerned about simply filtering out systematic artifacts without understanding where they are coming from. They are not normally observed in sheared genomic DNA sequencing.
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